High-Throughput Sequencing of Transposable Elements Insertions Reveals Genomic Evidence for Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environment

نویسندگان

  • Clément Goubert
  • Hélène Henri
  • Guillaume Minard
  • Claire Valiente Moro
  • Patrick Mavingui
  • Cristina Vieira
  • Matthieu Boulesteix
چکیده

Invasive species represent unique opportunities to evaluate the role of local adaptation during colonization of new environments. Among these, the Asian tiger mosquito, Aedes albopictus, is a threatening vector of several human viral diseases, including dengue, chikungunya and the emerging Zika feverssometimes been considered as the reflect of a great "ecological plasticity". However, no study has been conducted to assess the role of adaptive evolution in the ecological success of Ae. albopictus at the molecular level. In the present study we performed a genomic scan to search for potential signatures of selection leading to local adaptation in a hundred of field collected mosquitoes from native populations of Vietnam and temperate invasive populations of Europe. High throughput genotyping of transposable element insertions generated more than 120 000 polymorphic loci, which in their great majority revealed a virtual absence of structure between bio-geographic areas. Nevertheless, 92 outlier loci show a high level of differentiation between temperate and tropical populations. The majority of these loci segregates at high insertion frequencies among European populations, indicating that this pattern could have been caused by recent events of adaptive evolution in temperate areas. Six outliers were located near putative diapause effector genes, suggesting fine tunning of this critical pathway during local adaptation. 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 2 peer-reviewed) is the author/funder. All rights reserved. No reuse allowed without permission. The copyright holder for this preprint (which was not . http://dx.doi.org/10.1101/049197 doi: bioRxiv preprint first posted online Apr. 18, 2016;

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

High-Throughput Sequencing of Transposable Elements Insertions Provides Evidence for Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environments

22 Invasive species represent unique opportunities to evaluate the role of local 23 adaptation during colonization of new environments. Among these, the Asian 24 tiger mosquito, Aedes albopictus, is a threatening vector of several human viral 25 diseases, including dengue, chikungunya and the emerging Zika fevers. Its broad 26 presence in both temperate and tropical environments has sometimes b...

متن کامل

De Novo Assembly and Annotation of the Asian Tiger Mosquito (Aedes albopictus) Repeatome with dnaPipeTE from Raw Genomic Reads and Comparative Analysis with the Yellow Fever Mosquito (Aedes aegypti)

Repetitive DNA, including transposable elements (TEs), is found throughout eukaryotic genomes. Annotating and assembling the "repeatome" during genome-wide analysis often poses a challenge. To address this problem, we present dnaPipeTE-a new bioinformatics pipeline that uses a sample of raw genomic reads. It produces precise estimates of repeated DNA content and TE consensus sequences, as well ...

متن کامل

Retrotransposon mobilization in cancer genomes

The Cancer Genome Atlas project was initiated by the National Cancer Institute in order to characterize the genomes of hundreds of tumors of various cancer types. While much effort has been put into detecting somatic genomic variation in these data, somatic structural variation induced by the activity of transposable element insertions has not been reported. Transposable elements (TEs) are part...

متن کامل

Genome-Wide Patterns of Adaptation to Temperate Environments Associated with Transposable Elements in Drosophila

Investigating spatial patterns of loci under selection can give insight into how populations evolved in response to selective pressures and can provide monitoring tools for detecting the impact of environmental changes on populations. Drosophila is a particularly good model to study adaptation to environmental heterogeneity since it is a tropical species that originated in sub-Saharan Africa an...

متن کامل

Phylogenetic Conflict in Bears Identified by Automated Discovery of Transposable Element Insertions in Low-Coverage Genomes

Phylogenetic reconstruction from transposable elements (TEs) offers an additional perspective to study evolutionary processes. However, detecting phylogenetically informative TE insertions requires tedious experimental work, limiting the power of phylogenetic inference. Here, we analyzed the genomes of seven bear species using high-throughput sequencing data to detect thousands of TE insertions...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2016